Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HDAC1

Cell type

Cell type Class
Placenta
Cell type
Cytotrophoblast
NA
NA

Attributes by original data submitter

Sample

source_name
Placenta
tissue
Term placenta
cell type
Cytotrophoblast
chip antibody
HDAC1 (Santa Cruz Biotech, sc-7872)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were cross-linked with 1% formaldehyde and for 5 min at room and were lysed in ChIP lysis buffer. Chromatins were IPed by ChIP grade antibodies to RelB (Santa Cruz Biotech, sc-226), CBP (Abcam, ab2832), HDAC1 (Santa Cruz Biotech, sc-7872), or H3K9ac (Cell Signaling, 9649). NEBNext Ultra DNA Library Prep with Beads Size Selection

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg19

Number of total reads
16976734
Reads aligned (%)
81.0
Duplicates removed (%)
15.8
Number of peaks
664 (qval < 1E-05)

hg38

Number of total reads
16976734
Reads aligned (%)
83.0
Duplicates removed (%)
14.5
Number of peaks
527 (qval < 1E-05)

Base call quality data from DBCLS SRA