Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
KDM6B

Cell type

Cell type Class
Blood
Cell type
CUTLL1
NA
NA

Attributes by original data submitter

Sample

source_name
ChIP-SEQ_JMJD3 CUTLL1
cell line
CUTLL1
cell type
human T cell leukemia cells
chip antibody
JMJD3
chip antibody vendor
abgent

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
JMJD3 ChIP: 10 million cells were used for the ChIP and precipitated using 10micrograms of antibody against human JMJD3. Libraries were generated as described before, including end-repair, A-tailing, adapter (Illumina Truseq system) ligation and PCR amplification.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
42822421
Reads aligned (%)
87.2
Duplicates removed (%)
11.1
Number of peaks
1272 (qval < 1E-05)

hg38

Number of total reads
42822421
Reads aligned (%)
89.2
Duplicates removed (%)
9.7
Number of peaks
1302 (qval < 1E-05)

Base call quality data from DBCLS SRA