Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
CUTLL1
NA
NA

Attributes by original data submitter

Sample

source_name
ChIP-SEQ_Input CUTLL1
cell line
CUTLL1
cell type
human T cell leukemia cells

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
JMJD3 ChIP: 10 million cells were used for the ChIP and precipitated using 10micrograms of antibody against human JMJD3. Libraries were generated as described before, including end-repair, A-tailing, adapter (Illumina Truseq system) ligation and PCR amplification.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
41537118
Reads aligned (%)
98.2
Duplicates removed (%)
11.6
Number of peaks
3454 (qval < 1E-05)

hg19

Number of total reads
41537118
Reads aligned (%)
97.5
Duplicates removed (%)
12.3
Number of peaks
3464 (qval < 1E-05)

Base call quality data from DBCLS SRA