Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RTA

Cell type

Cell type Class
Blood
Cell type
BCBL1
NA
NA

Attributes by original data submitter

Sample

source_name
TRExBCBL1-3xFLAG-RTA (recombinant KSHV+ PEL cell line) at 12hpi
treatment
doxycycline treated cells

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Genomic DNA from Input and from the FLAG (RTA) ChIP DNA was extracted using standard phenol:chloroform:isoamylalcohol protocol prior to downstream library construction. Libraries were constructed using a standard NuGEN library construction method.

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
42887585
Reads aligned (%)
95.8
Duplicates removed (%)
5.8
Number of peaks
14281 (qval < 1E-05)

hg19

Number of total reads
42887585
Reads aligned (%)
95.3
Duplicates removed (%)
6.9
Number of peaks
14031 (qval < 1E-05)

Base call quality data from DBCLS SRA