SRX5126507
GSM3509546: Sample 37 TET2mut AML H3K4me27ac rep1 ChIPseq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
Acute myeloid leukemia
NA
NA

Attributes by original data submitter

Sample

source_name
AML ex vivo culture
tissue
patient-derived TET2 mutant AML

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was extracted using Qiagen Puregene kit protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
39876803
Reads aligned (%)
98.2
Duplicates removed (%)
4.5
Number of peaks
24185 (qval < 1E-05)

hg19

Number of total reads
39876803
Reads aligned (%)
97.8
Duplicates removed (%)
5.1
Number of peaks
24107 (qval < 1E-05)

Base call quality data from DBCLS SRA