Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TLE3

Cell type

Cell type Class
Prostate
Cell type
C4-2
Tissue
Prostate
Cell Type
Epithelial
Disease
Prostate Cancer

Attributes by original data submitter

Sample

source_name
C42B
cell line
C42B
foxa1 genotype
WT/WT
target
TLE3
foxa1 antibody
NA
crispr clone
no
overexpression
no

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
45117203
Reads aligned (%)
191.7
Duplicates removed (%)
1.5
Number of peaks
1988 (qval < 1E-05)

hg38

Number of total reads
45117203
Reads aligned (%)
194.2
Duplicates removed (%)
1.3
Number of peaks
3285 (qval < 1E-05)

Base call quality data from DBCLS SRA