SRX5104311
GSM3504666: MCF7 input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF7
cell line
MCF7
cell type
Breast cancer cell line
sirna
none
chip-antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were cross-linked with 1% Formaldehyde, DNA was sheared using ultrasound and IP was overnight at 4C. ThruPLEX

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
22429068
Reads aligned (%)
95.9
Duplicates removed (%)
35.2
Number of peaks
784 (qval < 1E-05)

hg19

Number of total reads
22429068
Reads aligned (%)
94.8
Duplicates removed (%)
37.5
Number of peaks
930 (qval < 1E-05)

Base call quality data from DBCLS SRA