Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Blood
Cell type
OCI-LY-3
Primary Tissue
Blood
Tissue Diagnosis
Lymphoma B-cell

Attributes by original data submitter

Sample

age
52 year
dev stage
adult
donor ID
ENCDO355AAA
sex
male
health state
B cell lymphoma
sample type
immortalized cell line
cell line
OCI-LY3
lab
Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
extraction method: see document general protocol: https://www.encodeproject.org/documents/18f0d330-5799-45f7-babe-7728dfbd1103/@@download/attachment/Epigenomics_Mag%20Bead_ChIP_Protocol_v01.4_exp.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
23513356
Reads aligned (%)
95.6
Duplicates removed (%)
7.1
Number of peaks
46421 (qval < 1E-05)

hg19

Number of total reads
23513356
Reads aligned (%)
94.9
Duplicates removed (%)
8.1
Number of peaks
46301 (qval < 1E-05)

Base call quality data from DBCLS SRA