Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ARID2

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF7-ARID1A KO Clone 11_ARID2 ChIP-seq_Vehicle
cell line
MCF7
cell type
ER+ Breast Cancer Cell Line
passages
35-45
treatment
Vehicle
chip antibody
Bethyl A302-229A

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
22491364
Reads aligned (%)
98.8
Duplicates removed (%)
13.4
Number of peaks
777 (qval < 1E-05)

hg19

Number of total reads
22491364
Reads aligned (%)
98.0
Duplicates removed (%)
14.6
Number of peaks
983 (qval < 1E-05)

Base call quality data from DBCLS SRA