Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF7-ARID1A KO Clone 11_ER ChIP-seq_Vehicle
cell line
MCF7
cell type
ER+ Breast Cancer Cell Line
passages
35-45
treatment
Vehicle
chip antibody
Abcam ab3575 and Millipore 06-935 antibody mix

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
31438049
Reads aligned (%)
70.9
Duplicates removed (%)
27.4
Number of peaks
20484 (qval < 1E-05)

hg38

Number of total reads
31438049
Reads aligned (%)
72.5
Duplicates removed (%)
26.3
Number of peaks
20499 (qval < 1E-05)

Base call quality data from DBCLS SRA