Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ARID1A

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
ARID1A ChIP-seq Fulvestrant
cell line
MCF7
cell type
ER+ Breast Cancer Cell Line
passages
20-35
treatment
10 nM Fulvestrant for 6 hours
chip antibody
ARID1A HPA005456

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
37359787
Reads aligned (%)
75.5
Duplicates removed (%)
22.6
Number of peaks
1287 (qval < 1E-05)

hg38

Number of total reads
37359787
Reads aligned (%)
77.2
Duplicates removed (%)
21.5
Number of peaks
1104 (qval < 1E-05)

Base call quality data from DBCLS SRA