Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ZBTB7A

Cell type

Cell type Class
Prostate
Cell type
VCaP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
VCAP
cell line
prostate cancer cell line VCAP
culture condition
DHT
chip antibody
Human/Mouse ZBTB7A/Pokemon Antibody (R&D Systems, catalog# MAB3496, lot# CDOR0109121)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP DNA was collected according to the ChIP protocol in the paper's methods section. ThruPLEX® DNA-seq 48D Kit (Rubicon Genomics) was used for ChIP-Seq library construction.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
12217163
Reads aligned (%)
16.2
Duplicates removed (%)
80.2
Number of peaks
1794 (qval < 1E-05)

hg38

Number of total reads
12217163
Reads aligned (%)
17.0
Duplicates removed (%)
79.4
Number of peaks
1772 (qval < 1E-05)

Base call quality data from DBCLS SRA