Curated Sample Data


Genome
dm3
Antigen Class
Input control
Antigen
Input control
Cell type Class
Adult
Cell type
Ovary

Cell type information


NA
NA

Attributes by Original Data Submitter


source_name
WT_WT_Input DNA
strain
piwi/+ (wildtype)
age of animals
1-5 day old
tissue
Ovaries
sample type
Input chromatin

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Antibodies were used to perform ChIP and resulting chromatin fragments were used to prepare deep sequencing libraries. Please see treatment protocol for antibodies used. Libraries were prepared with NEBNext ChIP-Seq Sample Prep Master Mix Set 1 (NEB# E6240S) which provides in-line barcodes and libraries were sequenced with Illumina HiSeq 2000. Single-end sequencing of reads were up to 50 bases.

Platform Information


instrument_model
Illumina HiSeq 2000

External Database Query

Logs in read processing pipeline


Number of total reads
3216665
Reads aligned (%)
94.0
Duplicates removed (%)
27.7
Number of peaks
1456 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA