SRX5064642
GSM3489395: H3K9me3 ChIPSeq; Caenorhabditis elegans; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me3

Cell type

Cell type Class
Larvae
Cell type
L4
NA
NA

Attributes by original data submitter

Sample

source_name
whole worms
strain
N2
antibody
H3K9me3(Abcam)
developmental stage
L4

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP DNAs were isolated with antibody from whole worm lystaes.

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

ce11

Number of total reads
16090837
Reads aligned (%)
98.3
Duplicates removed (%)
28.4
Number of peaks
5634 (qval < 1E-05)

ce10

Number of total reads
16090837
Reads aligned (%)
98.3
Duplicates removed (%)
28.4
Number of peaks
5633 (qval < 1E-05)

Base call quality data from DBCLS SRA