SRX5064641
GSM3489394: H3K4me3 input; Caenorhabditis elegans; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Larvae
Cell type
L4
NA
NA

Attributes by original data submitter

Sample

source_name
whole worms
strain
N2
antibody
input
developmental stage
L4

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP DNAs were isolated with antibody from whole worm lystaes.

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

ce11

Number of total reads
27454854
Reads aligned (%)
22.9
Duplicates removed (%)
43.4
Number of peaks
277 (qval < 1E-05)

ce10

Number of total reads
27454854
Reads aligned (%)
22.9
Duplicates removed (%)
43.4
Number of peaks
277 (qval < 1E-05)

Base call quality data from DBCLS SRA