Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
embryonic stem cells
cell line
E14
cell type
embryonic stem cells
strain
129/Ola
sgrna
none
antibody
Input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin was extracted 8 days post-infection from cross-linked cells, and sonicated to 200-700 bp fragments. Immunoprecipitation was performed with 15 µg of chromatin and 2.5 µg of anti-H3K27ac antibody. DNA was purified using the GeneJET PCR purification kit (Thermo Fisher). Libraries were prepared from 1-5 ng of DNA using the NEBNext ultra II DNA library prep kit.

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
36798825
Reads aligned (%)
94.7
Duplicates removed (%)
14.0
Number of peaks
427 (qval < 1E-05)

mm9

Number of total reads
36798825
Reads aligned (%)
94.5
Duplicates removed (%)
14.0
Number of peaks
442 (qval < 1E-05)

Base call quality data from DBCLS SRA