Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Kdm1a

Cell type

Cell type Class
Blood
Cell type
Hematopoietic progenitors
NA
NA

Attributes by original data submitter

Sample

source_name
MLL-AF9 I-BET resistant cells
strain background
C57BL/6
tissue source
haematopoietic progenitors
cell line
MLL-AF9
cell phenotype
I-BET Resistant
shRNA
N/A
treatment
IBET
chip antibody
KDM1A/LSD1 (ab17721, Abcam)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
121742281
Reads aligned (%)
93.2
Duplicates removed (%)
25.9
Number of peaks
63796 (qval < 1E-05)

mm9

Number of total reads
121742281
Reads aligned (%)
93.0
Duplicates removed (%)
25.8
Number of peaks
63789 (qval < 1E-05)

Base call quality data from DBCLS SRA