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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K27ac
wikigenes
PDBj
CellType: Hematopoietic progenitors
ATCC
MeSH
RIKEN BRC
SRX5055998
GSM3486873: H3K27ac Scrambled DMSO; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K27ac
Cell type
Cell type Class
Blood
Cell type
Hematopoietic progenitors
NA
NA
Attributes by original data submitter
Sample
source_name
MLL-AF9 I-BET resistant cells
strain background
C57BL/6
tissue source
haematopoietic progenitors
cell line
MLL-AF9
cell phenotype
I-BET Resistant
shRNA
Pu.1 Scrambled
treatment
DMSO
chip antibody
anti-H3K27ac (ab4729, Abcam)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysate were isolated from formaldehybe cross-linked cells and sonicated to release the chromatin, then immunoprecipitated with antibody ThruPLEXTM-FD Prep Kit protocol (Rubicon Genomics)
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
24767957
Reads aligned (%)
97.2
Duplicates removed (%)
8.2
Number of peaks
27038 (qval < 1E-05)
mm9
Number of total reads
24767957
Reads aligned (%)
97.1
Duplicates removed (%)
8.2
Number of peaks
27041 (qval < 1E-05)
Base call quality data from
DBCLS SRA