SRX5034833
GSM3484623: Input TCF21; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Cardiovascular
Cell type
Coronary artery smooth muscle
NA
NA

Attributes by original data submitter

Sample

source_name
coronary artery smooth muscle cells
cell type
coronary artery smooth muscle cells
lines
1508
passage
4-7
antibody
none
genotype/variation
input control

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated cells and protein-DNA complexes were isolated with antibody. Libraries were prepared with KAPA Hyper Prep kit (KK8502) per standrad instruction.

Sequencing Platform

instrument_model
HiSeq X Ten

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
53775743
Reads aligned (%)
59.1
Duplicates removed (%)
4.0
Number of peaks
16234 (qval < 1E-05)

hg19

Number of total reads
53775743
Reads aligned (%)
58.2
Duplicates removed (%)
4.7
Number of peaks
14880 (qval < 1E-05)

Base call quality data from DBCLS SRA