Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HIRA

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
Fibroblasts
cell line
IMR90
chip antibody
HIRA (approximately equimolar mixture of WC15, WC19, WC117, WC 119)
cell state
senescent

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
49281179
Reads aligned (%)
45.7
Duplicates removed (%)
50.6
Number of peaks
4561 (qval < 1E-05)

hg38

Number of total reads
49281179
Reads aligned (%)
47.1
Duplicates removed (%)
49.6
Number of peaks
4328 (qval < 1E-05)

Base call quality data from DBCLS SRA