Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
DCP1A

Cell type

Cell type Class
Neural
Cell type
SH-EP
NA
NA

Attributes by original data submitter

Sample

source_name
SH-EP-NMYCER
cell line
SH-EP-NMYCER
treatment
EtOH
treatment2
none
shRNA
shSCR
antibody
DCP1A (Santa Cruz, sc-100706)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
13287649
Reads aligned (%)
63.5
Duplicates removed (%)
36.4
Number of peaks
1974 (qval < 1E-05)

hg38

Number of total reads
13287649
Reads aligned (%)
63.7
Duplicates removed (%)
36.1
Number of peaks
1945 (qval < 1E-05)

Base call quality data from DBCLS SRA