Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Bone
Cell type
HT-1080
Primary Tissue
Bone
Tissue Diagnosis
Fibrosarcoma

Attributes by original data submitter

Sample

source_name
Input_library_Control
cell line
HT1080
tissue source
connective tissue
disease
fibrosarcoma
oncogene
ras +

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP was performed in two biological replicates according to Abcam X-ChIP protocol (https://www.abcam.com/protocols/cross-linking-chromatin-immunoprecipitation-x-chip-protocol) with minor changes (see Materials and Methods section). Each library was sequenced using paired end sequencing on an Illumina NextSeq 550;

Sequencing Platform

instrument_model
NextSeq 550

hg38

Number of total reads
60533468
Reads aligned (%)
98.6
Duplicates removed (%)
3.8
Number of peaks
1532 (qval < 1E-05)

hg19

Number of total reads
60533468
Reads aligned (%)
97.7
Duplicates removed (%)
5.1
Number of peaks
1244 (qval < 1E-05)

Base call quality data from DBCLS SRA