Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
HEK 293T cells
cell line
HEK 293T
overexpression
FlagCDC20
chip antibody
None

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was sheared by sonication and protein-DNA complexes were isolated with Flag M2 antibody (Sigma F1804). Libraries were generated using the Wafergen DNA prep kit (Illumina PrepX). Indexing and fragment enrichment were performed by PCR (Kapa HiFi PCR kit). DNA fragments were further size selected using SAGE Pippin Prep (<600 bp).

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg38

Number of total reads
33353722
Reads aligned (%)
97.8
Duplicates removed (%)
21.4
Number of peaks
699 (qval < 1E-05)

hg19

Number of total reads
33353722
Reads aligned (%)
96.7
Duplicates removed (%)
21.7
Number of peaks
296 (qval < 1E-05)

Base call quality data from DBCLS SRA