Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
usp

Cell type

Cell type Class
Pupae
Cell type
White prepupae
NA
NA

Attributes by original data submitter

Sample

source_name
USP-GFP_WPP+12-seq_ChIP_Rep3
strain
USP-GFP
developmental stage
WPP+12hrs
genotype
PBac{y[+]-attP-3B}VK00033
transgene
USP genomic coding region

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

dm3

Number of total reads
24331776
Reads aligned (%)
58.1
Duplicates removed (%)
21.3
Number of peaks
0 (qval < 1E-05)

dm6

Number of total reads
24331776
Reads aligned (%)
56.6
Duplicates removed (%)
23.0
Number of peaks
0 (qval < 1E-05)

Base call quality data from DBCLS SRA