Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MED16

Cell type

Cell type Class
Digestive tract
Cell type
HCT 116
Primary Tissue
Colon
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
HCT116 colorectal cancer cells
cell line
HCT116
factor
MED16
usp22 status
KO
shRNA
shUSP22
treatment
u
replicate
1
antibody
Abcam cat# ab130996

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
44600060
Reads aligned (%)
95.6
Duplicates removed (%)
0.9
Number of peaks
717 (qval < 1E-05)

hg38

Number of total reads
44600060
Reads aligned (%)
96.1
Duplicates removed (%)
0.9
Number of peaks
553 (qval < 1E-05)

Base call quality data from DBCLS SRA