Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ubx

Cell type

Cell type Class
Embryo
Cell type
Neuronal cells
NA
NA

Attributes by original data submitter

Sample

source_name
neuronal stage 10-13
cell type
neuronal
chip-antibody
gp-Ubx (home made)
genotype
elav>INTACT

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
tissue specific nuclei were extracted vis the INTACT method (Steiner et al., 2012) Samples were amplified using the ThruPLEX DNA-Seq Kit (Rubicon). Libraries were prepared according to Illumina's instructions accompanying the DNA Sample Kit (Part# 0801-0303).

Sequencing Platform

instrument_model
Illumina HiSeq 2000

dm3

Number of total reads
53415299
Reads aligned (%)
6.1
Duplicates removed (%)
84.8
Number of peaks
4461 (qval < 1E-05)

dm6

Number of total reads
53415299
Reads aligned (%)
4.4
Duplicates removed (%)
88.7
Number of peaks
3924 (qval < 1E-05)

Base call quality data from DBCLS SRA