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Install and launch IGV before selecting data to visualize
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Ubx
wikigenes
PDBj
CellType: Mesoderm
ATCC
MeSH
RIKEN BRC
SRX4933874
GSM3445553: mlUbx input S; Drosophila melanogaster; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Ubx
Cell type
Cell type Class
Embryo
Cell type
Mesoderm
NA
NA
Attributes by original data submitter
Sample
source_name
mesoderm stage 14-17
cell type
mesoderm
chip-antibody
gp-Ubx (home made)
genotype
twi-INTACT
Sequenced DNA Library
library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests
Sequencing Platform
instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests
Where can I get the processing logs?
Read processing pipeline
log
dm3
Number of total reads
80130616
Reads aligned (%)
97.5
Duplicates removed (%)
27.7
Number of peaks
0 (qval < 1E-05)
dm6
Number of total reads
80130616
Reads aligned (%)
96.9
Duplicates removed (%)
33.0
Number of peaks
0 (qval < 1E-05)
Base call quality data from
DBCLS SRA