SRX4910588
GSM3439190: D458-IgG; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
D458
NA
NA

Attributes by original data submitter

Sample

source_name
medulloblastoma cell line D458
cell line
D458
treatment
SETD8 wild type
chip antibody
IgG
tissue
Brain

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
genomic DNA was isolated by phenol/chloroform extraction and ethanol precipitation. ChIP-DNA was quantified using the Qubit® dsDNA High Sensitivity Assay kit (Thermo Fisher). Nugen Ovation Ultralow Library prep

Sequencing Platform

instrument_model
Illumina NovaSeq 6000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
51471676
Reads aligned (%)
91.6
Duplicates removed (%)
25.7
Number of peaks
1210 (qval < 1E-05)

hg19

Number of total reads
51471676
Reads aligned (%)
90.8
Duplicates removed (%)
26.1
Number of peaks
532 (qval < 1E-05)

Base call quality data from DBCLS SRA