SRX4910587
GSM3439189: D458-input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
D458
NA
NA

Attributes by original data submitter

Sample

source_name
medulloblastoma cell line D458
cell line
D458
treatment
SETD8 wild type
chip antibody
input
tissue
Brain

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
genomic DNA was isolated by phenol/chloroform extraction and ethanol precipitation. ChIP-DNA was quantified using the Qubit® dsDNA High Sensitivity Assay kit (Thermo Fisher). Nugen Ovation Ultralow Library prep

Sequencing Platform

instrument_model
Illumina NovaSeq 6000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
63848144
Reads aligned (%)
92.8
Duplicates removed (%)
9.8
Number of peaks
1770 (qval < 1E-05)

hg19

Number of total reads
63848144
Reads aligned (%)
92.2
Duplicates removed (%)
10.0
Number of peaks
720 (qval < 1E-05)

Base call quality data from DBCLS SRA