Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
Spleen CD4+ T cells
cell type
Th2 T lymphocytes
number of culture days
6
strain
C57BL/6 Setdb1+/+
antibody
H3K27ac (ab4729 from Abcam; lot GR228556-1)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA purification was performed by column (MinElute PCR purification kit, Qiagen). Libraries were prepared for sequencing using standard TruSeq Illumina protocols (ChIP-seq) and Nextera DNA Library Prep Kit Illumina (ATAC-seq).

Sequencing Platform

instrument_model
Illumina HiSeq 3000

mm10

Number of total reads
23284052
Reads aligned (%)
87.6
Duplicates removed (%)
18.8
Number of peaks
6789 (qval < 1E-05)

mm9

Number of total reads
23284052
Reads aligned (%)
87.6
Duplicates removed (%)
18.7
Number of peaks
6743 (qval < 1E-05)

Base call quality data from DBCLS SRA