Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TP53

Cell type

Cell type Class
Epidermis
Cell type
BJ
Primary Tissue
Skin
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
BJ_untreated_p53
cell line
BJ
cell type
Human diploid foreskin fibroblasts (BJ) immortalized with hTERT
exposed to
none (untreated control)
chip antibody
p53 (DO-1)
chip antibody vendor
Santa Cruz

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
32287730
Reads aligned (%)
62.0
Duplicates removed (%)
32.6
Number of peaks
1419 (qval < 1E-05)

hg38

Number of total reads
32287730
Reads aligned (%)
63.8
Duplicates removed (%)
31.1
Number of peaks
1226 (qval < 1E-05)

Base call quality data from DBCLS SRA