Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: rhi
wikigenes
PDBj
CellType: Ovary
ATCC
MeSH
RIKEN BRC
SRX485207
GSM1346548: Rhino ChIP from piwi germline knock-down ovaries, replicate 1; Drosophila melanogaster; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
rhi
Cell type
Cell type Class
Adult
Cell type
Ovary
NA
NA
Attributes by original data submitter
Sample
source_name
Rhino ChIP from piwi germline knock-down ovaries
developmental stage
4-6 days old adult
Sex
female
tissue
ovary
germline knock-down
piwi
chip antibody
custom-made rabbit polyclonal antibody
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq was performed according to Lee et al, Nat Protoc, 2006 ChIP-seq libraries were generated using the NEBNext Ultra DNA Library Prep Kit for Illumina (NEB) and the Kapa HiFi Library Amp Real-Time Kit (Peqlab) for amplification.
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
27157073
Reads aligned (%)
89.8
Duplicates removed (%)
62.5
Number of peaks
3942 (qval < 1E-05)
dm3
Number of total reads
27157073
Reads aligned (%)
90.2
Duplicates removed (%)
58.0
Number of peaks
5712 (qval < 1E-05)
Base call quality data from
DBCLS SRA