Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Foxp3

Cell type

Cell type Class
Blood
Cell type
Treg
NA
NA

Attributes by original data submitter

Sample

source_name
Activated Treg
cell type
Activated Treg
antibody
Foxp3 antibody is a custom polyclonal antibody that has been affinity purified
cell source
Primary Mouse T cells isolated ex-vivo and sorted

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were harvested from mice that were approximately 8 weeks old. Lymph nodes and spleen were extracted and sorted based on GFP (Foxp3) Cells were fixed with formaldehyde, nuclei were extracted and sonicated. Antibodies were incubated with sonicated chromatin. Standard illumina kit

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
35541984
Reads aligned (%)
92.9
Duplicates removed (%)
57.8
Number of peaks
1452 (qval < 1E-05)

mm9

Number of total reads
35541984
Reads aligned (%)
92.6
Duplicates removed (%)
57.9
Number of peaks
1528 (qval < 1E-05)

Base call quality data from DBCLS SRA