Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
Mouse embryonic fibroblasts
chip antibody
input
treatment
0.2 ug/ml Doxorubicin 12 hours
cell line
MEF-1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
RNA: TriZol / ChIP: Immunopurification of DNA followed by phenol:chloroform extraction Illumina TruSeq

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
16016755
Reads aligned (%)
91.8
Duplicates removed (%)
7.4
Number of peaks
391 (qval < 1E-05)

mm9

Number of total reads
16016755
Reads aligned (%)
91.6
Duplicates removed (%)
7.6
Number of peaks
452 (qval < 1E-05)

Base call quality data from DBCLS SRA