SRX483591
GSM1342494: GM00011 ChIP p53; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TP53

Cell type

Cell type Class
Epidermis
Cell type
GM00011
NA
NA

Attributes by original data submitter

Sample

source_name
Fetal skin fibroblasts
biomaterial_provider
GM00011
chip antibody
p53
treatment
0.2 ug/ml Doxorubicin 12 hours
cell line
GM00011

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
RNA: TriZol / ChIP: Immunopurification of DNA followed by phenol:chloroform extraction Illumina TruSeq

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
31710642
Reads aligned (%)
88.7
Duplicates removed (%)
41.8
Number of peaks
3826 (qval < 1E-05)

hg38

Number of total reads
31710642
Reads aligned (%)
89.4
Duplicates removed (%)
40.5
Number of peaks
3765 (qval < 1E-05)

Base call quality data from DBCLS SRA