SRX483590
GSM1342493: GM00011 ChIP input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Epidermis
Cell type
GM00011
NA
NA

Attributes by original data submitter

Sample

source_name
Fetal skin fibroblasts
biomaterial_provider
GM00011
chip antibody
input
treatment
0.2 ug/ml Doxorubicin 12 hours
cell line
GM00011

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
RNA: TriZol / ChIP: Immunopurification of DNA followed by phenol:chloroform extraction Illumina TruSeq

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
21135861
Reads aligned (%)
99.1
Duplicates removed (%)
2.8
Number of peaks
760 (qval < 1E-05)

hg19

Number of total reads
21135861
Reads aligned (%)
98.2
Duplicates removed (%)
4.6
Number of peaks
944 (qval < 1E-05)

Base call quality data from DBCLS SRA