Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
Py2T
NA
NA

Attributes by original data submitter

Sample

source_name
Py2T breast cancer cells
cell line
Py2T, breast cancer cells
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cross-linked chromatin was sonicated to achieve an average fragment size of 500 bp. 150 ug of Chromatin and 5 ug of anti-Tead2 antibody were used for ChIP. The ChIP libraries were prepared with the Illumina ChIP-Seq DNA Sample Prep Kit (Cat# IP-102-1001) according to Illumina’s instructions and sequenced on the Genome Analyzer 2 following the manufacturer’s protocols.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
242496214
Reads aligned (%)
93.4
Duplicates removed (%)
79.8
Number of peaks
2098 (qval < 1E-05)

mm9

Number of total reads
242496214
Reads aligned (%)
93.2
Duplicates removed (%)
79.8
Number of peaks
2198 (qval < 1E-05)

Base call quality data from DBCLS SRA