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Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: OSC
ATCC
MeSH
RIKEN BRC
SRX4823782
GSM3425338: input DNA used for chromatin IP in Piwi KD OSCs; Drosophila melanogaster; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Cell line
Cell type
OSC
Tissue Source
ovary
Developmental Stage
adult stage
Attributes by original data submitter
Sample
source_name
OSCs
cell type
OSC
genotype
Piwi knockdown
chip antibody
none
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin immunoprecipitation (ChIP) was carried out according to Lee et al. (2006) with NEBNext Ultra DNA Library Prep Kit Illumina (NEB)
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
49157846
Reads aligned (%)
80.2
Duplicates removed (%)
73.6
Number of peaks
3977 (qval < 1E-05)
dm3
Number of total reads
49157846
Reads aligned (%)
80.5
Duplicates removed (%)
69.9
Number of peaks
6043 (qval < 1E-05)
Base call quality data from
DBCLS SRA