SRX4823781
GSM3425337: input DNA used for chromatin IP in control KD OSCs; Drosophila melanogaster; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Cell line
Cell type
OSC
Tissue Source
ovary
Developmental Stage
adult stage

Attributes by original data submitter

Sample

source_name
OSCs
cell type
OSC
genotype
control knockdown
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin immunoprecipitation (ChIP) was carried out according to Lee et al. (2006) with NEBNext Ultra DNA Library Prep Kit Illumina (NEB)

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
35147143
Reads aligned (%)
88.4
Duplicates removed (%)
65.9
Number of peaks
5160 (qval < 1E-05)

dm3

Number of total reads
35147143
Reads aligned (%)
88.8
Duplicates removed (%)
62.5
Number of peaks
6547 (qval < 1E-05)

Base call quality data from DBCLS SRA