Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BRCA1

Cell type

Cell type Class
Breast
Cell type
MCF 10A
Primary Tissue
Breast
Tissue Diagnosis
Fibrocystic Disease

Attributes by original data submitter

Sample

source_name
MCF10A
cell line
MCF10A
chip antibody
anti-BRCA1 mouse monoclonal D-9

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq DNA Sample Prep Kit (Illumina, inc.)

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
35048011
Reads aligned (%)
88.5
Duplicates removed (%)
7.4
Number of peaks
1600 (qval < 1E-05)

hg38

Number of total reads
35048011
Reads aligned (%)
90.9
Duplicates removed (%)
5.9
Number of peaks
1586 (qval < 1E-05)

Base call quality data from DBCLS SRA