Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Others

Cell type

Fibroblasts

NA

NA

Sample

source_name

twin 1_T21_fetal primary fibroblasts_DNaseI

disease

Trisomy 21

tissue

Fetal primary fibroblasts

Sequenced DNA Library

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

library_construction_protocol

Refer to the Nuclei isolation section of John et.al. Current Protocols in Molecular Biology PMID: 23821440 Illumina TruSeq v2

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

61737166

Reads aligned (%)

71.7

Duplicates removed (%)

26.8

Number of peaks

156643 (qval < 1E-05)

hg19

Number of total reads

61737166

Reads aligned (%)

71.3

Duplicates removed (%)

27.8

Number of peaks

156382 (qval < 1E-05)