Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Kidney
Cell type
RCC4
NA
NA

Attributes by original data submitter

Sample

source_name
kidney cancer cell line
cell line
RCC4
tissue
kidney cancer cell line
degree of hypoxia
normoxia
duration of hypoxia
--
chip antibody
input chromatin

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
38705153
Reads aligned (%)
98.5
Duplicates removed (%)
8.3
Number of peaks
4645 (qval < 1E-05)

hg19

Number of total reads
38705153
Reads aligned (%)
97.9
Duplicates removed (%)
8.5
Number of peaks
4464 (qval < 1E-05)

Base call quality data from DBCLS SRA