Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
EPAS1

Cell type

Cell type Class
Kidney
Cell type
HKC8
NA
NA

Attributes by original data submitter

Sample

source_name
kidney proximal tubule cell line
cell line
HKC8_WT
tissue
kidney proximal tubule cell line
degree of hypoxia
0.5%
duration of hypoxia
16 hours
chip antibody
HIF2a (PM9)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
38146334
Reads aligned (%)
98.4
Duplicates removed (%)
11.4
Number of peaks
7140 (qval < 1E-05)

hg19

Number of total reads
38146334
Reads aligned (%)
97.8
Duplicates removed (%)
11.6
Number of peaks
6696 (qval < 1E-05)

Base call quality data from DBCLS SRA