Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HIF1A

Cell type

Cell type Class
Kidney
Cell type
HKC8
NA
NA

Attributes by original data submitter

Sample

source_name
kidney proximal tubule cell line
cell line
HKC8
tissue
kidney proximal tubule cell line
degree of hypoxia
0.5%
duration of hypoxia
6 hours
chip antibody
HIF1a (PM14)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
12645864
Reads aligned (%)
94.8
Duplicates removed (%)
3.2
Number of peaks
774 (qval < 1E-05)

hg38

Number of total reads
12645864
Reads aligned (%)
96.5
Duplicates removed (%)
2.2
Number of peaks
603 (qval < 1E-05)

Base call quality data from DBCLS SRA