Curated Sample Data


Genome
dm3
Antigen Class
Input control
Antigen
Input control
Cell type Class
Cell line
Cell type
S2R+

Cell type information


Source
Oregon R
Developmental Stage
late embryonic stage

Attributes by Original Data Submitter


source_name
Input sample for Mago knockdown (earlier passage)
cell line
S2R+ Cells
cell type
Embryonic
genotype/variation
Mago Knockdown
chip antibody
Input Sample

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was recovered after reverse crosslinking and phenol chloroform extraction. After precipitating and pelleting, DNA was dissolved in 30 _l of TE After checking enrichment the recovered DNA was converted into libraries using NebNext Ultra DNA library preperation kit, following manufacturer's protocol

Platform Information


instrument_model
Illumina HiSeq 2500

External Database Query

Logs in read processing pipeline


Number of total reads
12987980
Reads aligned (%)
97.5
Duplicates removed (%)
9.0
Number of peaks
3107 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA