Antigen

Antigen Class

Unclassified

Antigen

Unclassified

Cell type

Cell type Class

Breast

Cell type

T-47D

Primary Tissue

Breast

Tissue Diagnosis

Adenocarcinoma Ductal

Sample

source_name

T47D

cell type

ER+/PR+

target protein

ChIP-H3K27ac

pre treatment

Untreated

pre treatment time

0

treatment

Progesterone

treatment time

30

sequencing core

CRG

send for sequencing on

01/26/2017

sequencing index

GTCCGC

illumina machine

Illumina HiSeq 2000

application

ChIP-seq

read length

50

sequencing type

SE

library type

Unstranded

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

In Situ Hi-C was performed according previously described protocol (Rao et al., 2014) with some modifications (Le Dily et al., 2017). Paired-end libraries were generated with Truseq adaptors (Illumina) according previously published Hi-C protocols (Rao et al., 2014).

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

31167891

Reads aligned (%)

98.6

Duplicates removed (%)

4.0

Number of peaks

18092 (qval < 1E-05)

hg19

Number of total reads

31167891

Reads aligned (%)

98.1

Duplicates removed (%)

4.9

Number of peaks

17979 (qval < 1E-05)