Antigen

Antigen Class

Unclassified

Antigen

Unclassified

Cell type

Cell type Class

Breast

Cell type

Breast cancer cells

NA

NA

Sample

source_name

GM

cell type

ER-/PR-

target protein

ChIP-CTCF

pre treatment

Untreated

pre treatment time

0

treatment

Untreated

treatment time

0

sequencing core

4DGU

send for sequencing on

9/8/2016

sequencing index

AACCAG

illumina machine

Illumina NextSeq 500

application

ChIP-seq

read length

75

sequencing type

PE

library type

Unknown

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

In Situ Hi-C was performed according previously described protocol (Rao et al., 2014) with some modifications (Le Dily et al., 2017). Paired-end libraries were generated with Truseq adaptors (Illumina) according previously published Hi-C protocols (Rao et al., 2014).

Sequencing Platform

instrument_model

NextSeq 500

hg38

Number of total reads

156385084

Reads aligned (%)

96.4

Duplicates removed (%)

10.9

Number of peaks

36174 (qval < 1E-05)

hg19

Number of total reads

156385084

Reads aligned (%)

95.2

Duplicates removed (%)

11.1

Number of peaks

34800 (qval < 1E-05)