Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PPARG

Cell type

Cell type Class
Adipocyte
Cell type
Adipose Tissue
MeSH Description
Encapsulated adipose tissue.

Attributes by original data submitter

Sample

source_name
Adipose tissue
tissue
Adipose
chip antibody
PPARg(Santa Cruz Biotechnology, Cat# sc-7196)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
43406875
Reads aligned (%)
93.5
Duplicates removed (%)
48.5
Number of peaks
17774 (qval < 1E-05)

hg38

Number of total reads
43406875
Reads aligned (%)
94.2
Duplicates removed (%)
47.5
Number of peaks
18108 (qval < 1E-05)

Base call quality data from DBCLS SRA