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BigWig
Peak-call (q < 1E-05)
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Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K14ac
wikigenes
PDBj
CellType: Hematopoietic progenitors
ATCC
MeSH
RIKEN BRC
SRX4796163
GSM3416307: e11-1-H3K14Ac; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K14ac
Cell type
Cell type Class
Blood
Cell type
Hematopoietic progenitors
NA
NA
Attributes by original data submitter
Sample
source_name
MLL-AF9 I-BET resistant cells
strain/background
C57BL/6
cell type
haematopoietic progenitors
condition
I-BET Resistant
treatment
e11_1_HBO1_sgRNA
chip antibody
Acetyl-Histone H3(K14) (D4B9, Cell Signalling Technologies, ref 10/2017)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysate was isolated from formaldehyde cross-linked cells and sonicated to release the chromatin, then immunoprecipitated with antibody. ThruPLEXTM-FD Prep Kit protocol (Rubicon Genomics).
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
11727806
Reads aligned (%)
94.8
Duplicates removed (%)
10.1
Number of peaks
28073 (qval < 1E-05)
mm9
Number of total reads
11727806
Reads aligned (%)
94.7
Duplicates removed (%)
10.1
Number of peaks
28089 (qval < 1E-05)
Base call quality data from
DBCLS SRA