Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RAD21

Cell type

Cell type Class
Breast
Cell type
T-47D
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
T47D whole cell
cell line
T47D
chip antibody
RAD21 (Abcam ab992, lot: GR3194001-2)
replicate
replicate 1
pre_treatment
500 nM triptolide
pre_treatment_time
2h
treatment
110 mM NaCl
treatment_time
60 min + 60 min

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
43090842
Reads aligned (%)
51.6
Duplicates removed (%)
12.9
Number of peaks
26856 (qval < 1E-05)

hg38

Number of total reads
43090842
Reads aligned (%)
52.7
Duplicates removed (%)
11.7
Number of peaks
27165 (qval < 1E-05)

Base call quality data from DBCLS SRA